Simultaneous preservation of soil structural properties and phospholipid profiles: a comparison of three drying techniques

L. J. Deacon, Dmitri V. Grinev, John W. Crawford, James A. Harris, Karl Ritz, Iain M. Young

Research output: Contribution to journalArticle

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Abstract

There is a need to simultaneously preserve evidence of interactions between the biological community and soil structural properties of a soil in as near an intact (natural) state as possible. Three dehydration techniques were implemented and assessed for their ability to minimise disruption of both biological and physical properties of the same arable soil sample. Dehydration techniques applied until samples were at constant weight were i) air-drying at 20 °C (AD); ii) −80 °C freeze for 24 h, followed by freeze-drying (−80FD); and iii) liquid nitrogen snap freeze, followed by freeze-drying (LNFD) and were compared to a moist control. Physical structure was determined and quantifled in three dimensions using X-ray computed tomography and microbial phenotypic community composition was assessed using phospholipid fatty acid (PLFA) proflling. This study conflrms that any form of dehydration, when preparing soil for simultaneous biological and physical analysis, will alter the soil physical properties, and cause some change in apparent community structure. Freeze-drying (both the LNFD and −80FD treatments) was found to minimise disruption (when compared to the moist control soil) to both the soil physical properties and the community structure and is a preferable technique to air-drying which markedly alters the size and character of the pore network, as well as the phenotypic proflle. The LNFD was the preferred treatment over the −80FD treatment as samples show low variability between replicates and a fast turn-around time between samples. Therefore snap freezing in liquid nitrogen, followed by freeze drying is the most appropriate form of dehydration when two sets of data, both physical and biological, need to be preserved simultaneously from a soil core.
Original languageEnglish
Pages (from-to)284-287
Number of pages4
JournalPedosphere
Volume18
Issue number3
DOIs
StatePublished - Jun 2008

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soil
freeze drying
methodology
sampling
dehydration
air drying
soil physical properties
community structure
liquids
nitrogen
physical property
phospholipid
liquid
air
arable soils
computed tomography
preserves
soil properties
physical properties
phospholipids

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Deacon, L. J., Grinev, D. V., Crawford, J. W., Harris, J. A., Ritz, K., & Young, I. M. (2008). Simultaneous preservation of soil structural properties and phospholipid profiles: a comparison of three drying techniques. Pedosphere, 18(3), 284-287. DOI: 10.1016/S1002-0160(08)60018-1

Deacon, L. J.; Grinev, Dmitri V.; Crawford, John W.; Harris, James A.; Ritz, Karl; Young, Iain M. / Simultaneous preservation of soil structural properties and phospholipid profiles : a comparison of three drying techniques.

In: Pedosphere, Vol. 18, No. 3, 06.2008, p. 284-287.

Research output: Contribution to journalArticle

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Deacon, LJ, Grinev, DV, Crawford, JW, Harris, JA, Ritz, K & Young, IM 2008, 'Simultaneous preservation of soil structural properties and phospholipid profiles: a comparison of three drying techniques' Pedosphere, vol 18, no. 3, pp. 284-287. DOI: 10.1016/S1002-0160(08)60018-1

Simultaneous preservation of soil structural properties and phospholipid profiles : a comparison of three drying techniques. / Deacon, L. J.; Grinev, Dmitri V.; Crawford, John W.; Harris, James A.; Ritz, Karl; Young, Iain M.

In: Pedosphere, Vol. 18, No. 3, 06.2008, p. 284-287.

Research output: Contribution to journalArticle

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AU - Deacon,L. J.

AU - Grinev,Dmitri V.

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AU - Young,Iain M.

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N2 - There is a need to simultaneously preserve evidence of interactions between the biological community and soil structural properties of a soil in as near an intact (natural) state as possible. Three dehydration techniques were implemented and assessed for their ability to minimise disruption of both biological and physical properties of the same arable soil sample. Dehydration techniques applied until samples were at constant weight were i) air-drying at 20 °C (AD); ii) −80 °C freeze for 24 h, followed by freeze-drying (−80FD); and iii) liquid nitrogen snap freeze, followed by freeze-drying (LNFD) and were compared to a moist control. Physical structure was determined and quantifled in three dimensions using X-ray computed tomography and microbial phenotypic community composition was assessed using phospholipid fatty acid (PLFA) proflling. This study conflrms that any form of dehydration, when preparing soil for simultaneous biological and physical analysis, will alter the soil physical properties, and cause some change in apparent community structure. Freeze-drying (both the LNFD and −80FD treatments) was found to minimise disruption (when compared to the moist control soil) to both the soil physical properties and the community structure and is a preferable technique to air-drying which markedly alters the size and character of the pore network, as well as the phenotypic proflle. The LNFD was the preferred treatment over the −80FD treatment as samples show low variability between replicates and a fast turn-around time between samples. Therefore snap freezing in liquid nitrogen, followed by freeze drying is the most appropriate form of dehydration when two sets of data, both physical and biological, need to be preserved simultaneously from a soil core.

AB - There is a need to simultaneously preserve evidence of interactions between the biological community and soil structural properties of a soil in as near an intact (natural) state as possible. Three dehydration techniques were implemented and assessed for their ability to minimise disruption of both biological and physical properties of the same arable soil sample. Dehydration techniques applied until samples were at constant weight were i) air-drying at 20 °C (AD); ii) −80 °C freeze for 24 h, followed by freeze-drying (−80FD); and iii) liquid nitrogen snap freeze, followed by freeze-drying (LNFD) and were compared to a moist control. Physical structure was determined and quantifled in three dimensions using X-ray computed tomography and microbial phenotypic community composition was assessed using phospholipid fatty acid (PLFA) proflling. This study conflrms that any form of dehydration, when preparing soil for simultaneous biological and physical analysis, will alter the soil physical properties, and cause some change in apparent community structure. Freeze-drying (both the LNFD and −80FD treatments) was found to minimise disruption (when compared to the moist control soil) to both the soil physical properties and the community structure and is a preferable technique to air-drying which markedly alters the size and character of the pore network, as well as the phenotypic proflle. The LNFD was the preferred treatment over the −80FD treatment as samples show low variability between replicates and a fast turn-around time between samples. Therefore snap freezing in liquid nitrogen, followed by freeze drying is the most appropriate form of dehydration when two sets of data, both physical and biological, need to be preserved simultaneously from a soil core.

U2 - 10.1016/S1002-0160(08)60018-1

DO - 10.1016/S1002-0160(08)60018-1

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SN - 1002-0160

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Deacon LJ, Grinev DV, Crawford JW, Harris JA, Ritz K, Young IM. Simultaneous preservation of soil structural properties and phospholipid profiles: a comparison of three drying techniques. Pedosphere. 2008 Jun;18(3):284-287. Available from, DOI: 10.1016/S1002-0160(08)60018-1