The minimum information about a genome sequence (MIGS) specification

Dawn Field; George Garrity; Tanya Gray; Norman Morrison; Jeremy Selengut; Peter Sterk; Tatiana Tatusova; Nicholas Thomson; Michael J. Allen; Samuel V. Angiuoli; Michael Ashburner; Nelson Axelrod; Sandra Baldauf; Stuart Ballard; Jeffrey Boore; Guy Cochrane; James Cole; Peter Dawyndt; Paul De Vos; Claude dePamphilis; Robert Edwards; Nadeem Faruque; Robert Feldman; Jack Gilbert; Paul Gilna; Frank Oliver Glöckner; Philip Goldstein; Robert Guralnick; Dan Haft; David Hancock; Henning Hermjakob; Christiane Hertz-Fowler; Phil Hugenholtz; Ian Joint; Leonid Kagan; Matthew Kane; Jessie Kennedy; George Kowalchuk; Renzo Kottmann; Eugene Kolker; Saul Kravitz; Nikos Kyrpides; Jim Leebens-Mack; Suzanna E. Lewis; Kelvin Li; Allyson L. Lister; Phillip Lord; Natalia Maltsev; Victor Markowitz; Jennifer Martiny; Barbara Methe; Ilene Mizrachi; Richard Moxon; Karen Nelson; Julian Parkhill; Lita Proctor; Owen White; Susanna-Assunta Sansone; Andrew J. Spiers; Robert Stevens; Paul Swift; Chris Taylor; Yoshio Tateno; Adrian Tett; Sarah Turner; David Ussery; Bob Vaughan; Naomi Ward; Trish Whetzel; Ingio San Gil; Gareth Wilson; Anil Wipat

doi:10.1038/nbt1360

The minimum information about a genome sequence (MIGS) specification

Dawn Field, George Garrity, Tanya Gray, Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova, Nicholas Thomson, Michael J. Allen, Samuel V. Angiuoli, Michael Ashburner, Nelson Axelrod, Sandra Baldauf, Stuart Ballard, Jeffrey Boore, Guy Cochrane, James Cole, Peter Dawyndt, Paul De Vos, Claude dePamphilisRobert Edwards, Nadeem Faruque, Robert Feldman, Jack Gilbert, Paul Gilna, Frank Oliver Glöckner, Philip Goldstein, Robert Guralnick, Dan Haft, David Hancock, Henning Hermjakob, Christiane Hertz-Fowler, Phil Hugenholtz, Ian Joint, Leonid Kagan, Matthew Kane, Jessie Kennedy, George Kowalchuk, Renzo Kottmann, Eugene Kolker, Saul Kravitz, Nikos Kyrpides, Jim Leebens-Mack, Suzanna E. Lewis, Kelvin Li, Allyson L. Lister, Phillip Lord, Natalia Maltsev, Victor Markowitz, Jennifer Martiny, Barbara Methe, Ilene Mizrachi, Richard Moxon, Karen Nelson, Julian Parkhill, Lita Proctor, Owen White, Susanna-Assunta Sansone, Andrew J. Spiers, Robert Stevens, Paul Swift, Chris Taylor, Yoshio Tateno, Adrian Tett, Sarah Turner, David Ussery, Bob Vaughan, Naomi Ward, Trish Whetzel, Ingio San Gil, Gareth Wilson, Anil Wipat

Research output: Contribution to journal › Article › peer-review

940 Citations (Scopus)

Abstract

With the quantity of genomic data increasing at an exponential rate, it is imperative that these data be captured electronically, in a standard format. Standardization activities must proceed within the auspices of open-access and international working bodies. To tackle the issues surrounding the development of better descriptions of genomic investigations, we have formed the Genomic Standards Consortium (GSC). Here, we introduce the minimum information about a genome sequence (MIGS) specification with the intent of promoting participation in its development and discussing the resources that will be required to develop improved mechanisms of metadata capture and exchange. As part of its wider goals, the GSC also supports improving the ‘transparency’ of the information contained in existing genomic databases.

Original language	English
Pages (from-to)	541-547
Number of pages	7
Journal	Nature Biotechnology
Volume	26
Issue number	5
DOIs	https://doi.org/10.1038/nbt1360
Publication status	Published - May 2008

Keywords

Genome
Sequence

Access to Document

10.1038/nbt1360

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Field, D., Garrity, G., Gray, T., Morrison, N., Selengut, J., Sterk, P., Tatusova, T., Thomson, N., Allen, M. J., Angiuoli, S. V., Ashburner, M., Axelrod, N., Baldauf, S., Ballard, S., Boore, J., Cochrane, G., Cole, J., Dawyndt, P., De Vos, P., ... Wipat, A. (2008). The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology, 26(5), 541-547. https://doi.org/10.1038/nbt1360

Field, Dawn ; Garrity, George ; Gray, Tanya ; Morrison, Norman ; Selengut, Jeremy ; Sterk, Peter ; Tatusova, Tatiana ; Thomson, Nicholas ; Allen, Michael J. ; Angiuoli, Samuel V. ; Ashburner, Michael ; Axelrod, Nelson ; Baldauf, Sandra ; Ballard, Stuart ; Boore, Jeffrey ; Cochrane, Guy ; Cole, James ; Dawyndt, Peter ; De Vos, Paul ; dePamphilis, Claude ; Edwards, Robert ; Faruque, Nadeem ; Feldman, Robert ; Gilbert, Jack ; Gilna, Paul ; Glöckner, Frank Oliver ; Goldstein, Philip ; Guralnick, Robert ; Haft, Dan ; Hancock, David ; Hermjakob, Henning ; Hertz-Fowler, Christiane ; Hugenholtz, Phil ; Joint, Ian ; Kagan, Leonid ; Kane, Matthew ; Kennedy, Jessie ; Kowalchuk, George ; Kottmann, Renzo ; Kolker, Eugene ; Kravitz, Saul ; Kyrpides, Nikos ; Leebens-Mack, Jim ; Lewis, Suzanna E. ; Li, Kelvin ; Lister, Allyson L. ; Lord, Phillip ; Maltsev, Natalia ; Markowitz, Victor ; Martiny, Jennifer ; Methe, Barbara ; Mizrachi, Ilene ; Moxon, Richard ; Nelson, Karen ; Parkhill, Julian ; Proctor, Lita ; White, Owen ; Sansone, Susanna-Assunta ; Spiers, Andrew J. ; Stevens, Robert ; Swift, Paul ; Taylor, Chris ; Tateno, Yoshio ; Tett, Adrian ; Turner, Sarah ; Ussery, David ; Vaughan, Bob ; Ward, Naomi ; Whetzel, Trish ; San Gil, Ingio ; Wilson, Gareth ; Wipat, Anil. / The minimum information about a genome sequence (MIGS) specification. In: Nature Biotechnology. 2008 ; Vol. 26, No. 5. pp. 541-547.

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title = "The minimum information about a genome sequence (MIGS) specification",

abstract = "With the quantity of genomic data increasing at an exponential rate, it is imperative that these data be captured electronically, in a standard format. Standardization activities must proceed within the auspices of open-access and international working bodies. To tackle the issues surrounding the development of better descriptions of genomic investigations, we have formed the Genomic Standards Consortium (GSC). Here, we introduce the minimum information about a genome sequence (MIGS) specification with the intent of promoting participation in its development and discussing the resources that will be required to develop improved mechanisms of metadata capture and exchange. As part of its wider goals, the GSC also supports improving the {\textquoteleft}transparency{\textquoteright} of the information contained in existing genomic databases.",

author = "Dawn Field and George Garrity and Tanya Gray and Norman Morrison and Jeremy Selengut and Peter Sterk and Tatiana Tatusova and Nicholas Thomson and Allen, {Michael J.} and Angiuoli, {Samuel V.} and Michael Ashburner and Nelson Axelrod and Sandra Baldauf and Stuart Ballard and Jeffrey Boore and Guy Cochrane and James Cole and Peter Dawyndt and {De Vos}, Paul and Claude dePamphilis and Robert Edwards and Nadeem Faruque and Robert Feldman and Jack Gilbert and Paul Gilna and Gl{\"o}ckner, {Frank Oliver} and Philip Goldstein and Robert Guralnick and Dan Haft and David Hancock and Henning Hermjakob and Christiane Hertz-Fowler and Phil Hugenholtz and Ian Joint and Leonid Kagan and Matthew Kane and Jessie Kennedy and George Kowalchuk and Renzo Kottmann and Eugene Kolker and Saul Kravitz and Nikos Kyrpides and Jim Leebens-Mack and Lewis, {Suzanna E.} and Kelvin Li and Lister, {Allyson L.} and Phillip Lord and Natalia Maltsev and Victor Markowitz and Jennifer Martiny and Barbara Methe and Ilene Mizrachi and Richard Moxon and Karen Nelson and Julian Parkhill and Lita Proctor and Owen White and Susanna-Assunta Sansone and Spiers, {Andrew J.} and Robert Stevens and Paul Swift and Chris Taylor and Yoshio Tateno and Adrian Tett and Sarah Turner and David Ussery and Bob Vaughan and Naomi Ward and Trish Whetzel and {San Gil}, Ingio and Gareth Wilson and Anil Wipat",

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Field, D, Garrity, G, Gray, T, Morrison, N, Selengut, J, Sterk, P, Tatusova, T, Thomson, N, Allen, MJ, Angiuoli, SV, Ashburner, M, Axelrod, N, Baldauf, S, Ballard, S, Boore, J, Cochrane, G, Cole, J, Dawyndt, P, De Vos, P, dePamphilis, C, Edwards, R, Faruque, N, Feldman, R, Gilbert, J, Gilna, P, Glöckner, FO, Goldstein, P, Guralnick, R, Haft, D, Hancock, D, Hermjakob, H, Hertz-Fowler, C, Hugenholtz, P, Joint, I, Kagan, L, Kane, M, Kennedy, J, Kowalchuk, G, Kottmann, R, Kolker, E, Kravitz, S, Kyrpides, N, Leebens-Mack, J, Lewis, SE, Li, K, Lister, AL, Lord, P, Maltsev, N, Markowitz, V, Martiny, J, Methe, B, Mizrachi, I, Moxon, R, Nelson, K, Parkhill, J, Proctor, L, White, O, Sansone, S-A, Spiers, AJ, Stevens, R, Swift, P, Taylor, C, Tateno, Y, Tett, A, Turner, S, Ussery, D, Vaughan, B, Ward, N, Whetzel, T, San Gil, I, Wilson, G & Wipat, A 2008, 'The minimum information about a genome sequence (MIGS) specification', Nature Biotechnology, vol. 26, no. 5, pp. 541-547. https://doi.org/10.1038/nbt1360

The minimum information about a genome sequence (MIGS) specification. / Field, Dawn; Garrity, George; Gray, Tanya; Morrison, Norman; Selengut, Jeremy; Sterk, Peter; Tatusova, Tatiana; Thomson, Nicholas; Allen, Michael J.; Angiuoli, Samuel V.; Ashburner, Michael; Axelrod, Nelson; Baldauf, Sandra; Ballard, Stuart; Boore, Jeffrey; Cochrane, Guy; Cole, James; Dawyndt, Peter; De Vos, Paul; dePamphilis, Claude; Edwards, Robert; Faruque, Nadeem; Feldman, Robert; Gilbert, Jack; Gilna, Paul; Glöckner, Frank Oliver; Goldstein, Philip; Guralnick, Robert; Haft, Dan; Hancock, David; Hermjakob, Henning; Hertz-Fowler, Christiane; Hugenholtz, Phil; Joint, Ian; Kagan, Leonid; Kane, Matthew; Kennedy, Jessie; Kowalchuk, George; Kottmann, Renzo; Kolker, Eugene; Kravitz, Saul; Kyrpides, Nikos; Leebens-Mack, Jim; Lewis, Suzanna E.; Li, Kelvin; Lister, Allyson L.; Lord, Phillip; Maltsev, Natalia; Markowitz, Victor; Martiny, Jennifer; Methe, Barbara; Mizrachi, Ilene; Moxon, Richard; Nelson, Karen; Parkhill, Julian; Proctor, Lita; White, Owen; Sansone, Susanna-Assunta; Spiers, Andrew J.; Stevens, Robert; Swift, Paul; Taylor, Chris; Tateno, Yoshio; Tett, Adrian; Turner, Sarah; Ussery, David; Vaughan, Bob; Ward, Naomi; Whetzel, Trish; San Gil, Ingio; Wilson, Gareth; Wipat, Anil.

In: Nature Biotechnology, Vol. 26, No. 5, 05.2008, p. 541-547.

Research output: Contribution to journal › Article › peer-review

TY - JOUR

T1 - The minimum information about a genome sequence (MIGS) specification

AU - Field, Dawn

AU - Garrity, George

AU - Gray, Tanya

AU - Morrison, Norman

AU - Selengut, Jeremy

AU - Sterk, Peter

AU - Tatusova, Tatiana

AU - Thomson, Nicholas

AU - Allen, Michael J.

AU - Angiuoli, Samuel V.

AU - Ashburner, Michael

AU - Axelrod, Nelson

AU - Baldauf, Sandra

AU - Ballard, Stuart

AU - Boore, Jeffrey

AU - Cochrane, Guy

AU - Cole, James

AU - Dawyndt, Peter

AU - De Vos, Paul

AU - dePamphilis, Claude

AU - Edwards, Robert

AU - Faruque, Nadeem

AU - Feldman, Robert

AU - Gilbert, Jack

AU - Gilna, Paul

AU - Glöckner, Frank Oliver

AU - Goldstein, Philip

AU - Guralnick, Robert

AU - Haft, Dan

AU - Hancock, David

AU - Hermjakob, Henning

AU - Hertz-Fowler, Christiane

AU - Hugenholtz, Phil

AU - Joint, Ian

AU - Kagan, Leonid

AU - Kane, Matthew

AU - Kennedy, Jessie

AU - Kowalchuk, George

AU - Kottmann, Renzo

AU - Kolker, Eugene

AU - Kravitz, Saul

AU - Kyrpides, Nikos

AU - Leebens-Mack, Jim

AU - Lewis, Suzanna E.

AU - Li, Kelvin

AU - Lister, Allyson L.

AU - Lord, Phillip

AU - Maltsev, Natalia

AU - Markowitz, Victor

AU - Martiny, Jennifer

AU - Methe, Barbara

AU - Mizrachi, Ilene

AU - Moxon, Richard

AU - Nelson, Karen

AU - Parkhill, Julian

AU - Proctor, Lita

AU - White, Owen

AU - Sansone, Susanna-Assunta

AU - Spiers, Andrew J.

AU - Stevens, Robert

AU - Swift, Paul

AU - Taylor, Chris

AU - Tateno, Yoshio

AU - Tett, Adrian

AU - Turner, Sarah

AU - Ussery, David

AU - Vaughan, Bob

AU - Ward, Naomi

AU - Whetzel, Trish

AU - San Gil, Ingio

AU - Wilson, Gareth

AU - Wipat, Anil

PY - 2008/5

Y1 - 2008/5

N2 - With the quantity of genomic data increasing at an exponential rate, it is imperative that these data be captured electronically, in a standard format. Standardization activities must proceed within the auspices of open-access and international working bodies. To tackle the issues surrounding the development of better descriptions of genomic investigations, we have formed the Genomic Standards Consortium (GSC). Here, we introduce the minimum information about a genome sequence (MIGS) specification with the intent of promoting participation in its development and discussing the resources that will be required to develop improved mechanisms of metadata capture and exchange. As part of its wider goals, the GSC also supports improving the ‘transparency’ of the information contained in existing genomic databases.

AB - With the quantity of genomic data increasing at an exponential rate, it is imperative that these data be captured electronically, in a standard format. Standardization activities must proceed within the auspices of open-access and international working bodies. To tackle the issues surrounding the development of better descriptions of genomic investigations, we have formed the Genomic Standards Consortium (GSC). Here, we introduce the minimum information about a genome sequence (MIGS) specification with the intent of promoting participation in its development and discussing the resources that will be required to develop improved mechanisms of metadata capture and exchange. As part of its wider goals, the GSC also supports improving the ‘transparency’ of the information contained in existing genomic databases.

U2 - 10.1038/nbt1360

DO - 10.1038/nbt1360

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SP - 541

EP - 547

JO - Nature Biotechnology

JF - Nature Biotechnology

SN - 1087-0156

IS - 5

ER -

The minimum information about a genome sequence (MIGS) specification

Abstract

Keywords

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