Visualization, modelling and prediction in soil microbiology

Anthony G. O'Donnell, Iain M. Young, Steven P. Rushton, Mark D. Shirley, John W. Crawford

    Research output: Contribution to journalArticlepeer-review

    118 Citations (Scopus)


    The introduction of new approaches for characterizing microbial communities and imaging soil environments has benefited soil microbiology by providing new ways of detecting and locating microorganisms. Consequently, soil microbiology is poised to progress from simply cataloguing microbial complexity to becoming a systems science. A systems approach will enable the structures of microbial communities to be characterized and will inform how microbial communities affect soil function. Systems approaches require accurate analyses of the spatio–temporal properties of the different microenvironments present in soil. In this Review we advocate the need for the convergence of the experimental and theoretical approaches that are used to characterize and model the development of microbial communities in soils.
    Original languageEnglish
    Pages (from-to)689-699
    Number of pages11
    JournalNature Reviews Microbiology
    Publication statusPublished - Sept 2007


    • Microbial communities
    • Soil microbiology


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